Similar HOG based on pairwise relations to

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

HOG:E0804288.1c.5a with 3 members (myosin regulatory light)

Eukaryota / Opisthokonta / Metazoa / Eumetazoa / Bilateria / Deuterostomia / Chordata /

... /

Vertebrata / Gnathostomata / Euteleostomi / Sarcopterygii / Tetrapoda / Amniota / Mammalia / Theria / Eutheria / Boreoeutheria / Laurasiatheria / Carnivora / Caniformia /

Ursidae /

Completeness score: 1.00

‹

This HOG has 76 similar HOGs:

Loading, please wait...

Rank	HOG ID	Shared orthologs	HOG size	Description
1	HOG:E0804288.1c.5a	374	146	myosin regulatory light
2	HOG:E0804288.1c.4b	84	58	myosin regulatory light
3	HOG:E0804288.1a.2a.2a.1a.1b	67	27	myosin regulatory light
4	HOG:E0804288.1b.3c	24	18	myosin regulatory light
5	HOG:E0804288.1a.2a	12	70	myosin regulatory light
6	HOG:E0804288.1c.4a	11	26	myosin regulatory light
7	HOG:E0804288.1a.2a.2a.1a	10	37	myosin regulatory light
8	HOG:E0804288.1a.2a.2a	8	56	myosin regulatory light
9	HOG:E0804288.1b.3a.3b	7	5	myosin regulatory light
10	HOG:E0804288.1b.3a.3a.2b	6	2	myosin regulatory light
11	HOG:E0804288.1b.3a	6	17	myosin regulatory light
12	HOG:E0804288.1a.2b	6	3	myosin regulatory light
13	HOG:E0536260.3a.1b	5	2	myosin regulatory light chain
14	HOG:E0406922	5	17	EF-hand domain-containing protein
15	HOG:E0779281.1e.10b.8b	4	25	myosin regulatory light chain
16	HOG:E0804288.1c.5a.9b	3	1	myosin regulatory light
17	HOG:E0804288.1c.5a.9a	3	1	myosin regulatory light
18	HOG:E0804288.1c.5a.8c	3	1	myosin regulatory light
19	HOG:E0804288.1c.5a.8b	3	1	myosin regulatory light
20	HOG:E0804288.1c.5a.8a	3	1	myosin regulatory light
21	HOG:E0804288.1c.5a.15b	3	1	myosin regulatory light
22	HOG:E0804288.1c.5a.15a	3	1	myosin regulatory light
23	HOG:E0804288.1c.5a.14b	3	1	myosin regulatory light
24	HOG:E0804288.1c.5a.14a	3	1	myosin regulatory light
25	HOG:E0804288.1c.5a.13b	3	1	myosin regulatory light

Showing 1 to 25 of 76 rows rows per page